Gilany, Mahdi; Wilson, Paul; Jamzad, Amoon; Fooladgar, Fahimeh; To, Minh Nguyen Nhat; Wodlinger, Brian; Abolmaesumi, Purang; Mousavi, Parvin
Towards Confident Detection of Prostate Cancer using High Resolution Micro-ultrasound Proceedings Article Forthcoming
In: Medical Image Computing and Computer Assisted Interventions (MICCAI 2022), Forthcoming.
@inproceedings{nokey,
title = {Towards Confident Detection of Prostate Cancer using High Resolution Micro-ultrasound},
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Javadi, Golara; Samadi, Samareh; Bayat, Sharareh; and Samira Sojoudi,; Hurtado, Antonio; Eshumani, Walid; Chang, Silvia; Black, Peter; Mousavi, Parvin; Abolmaesumi, Purang
Training Deep Neural Networks with Noisy Clinical Labels: Towards Accurate Detection of Prostate Cancer in US Data Journal Article
In: International Journal of Computer Assisted Radiology and Surgery (IJCARS), 2022.
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Hu, Zoe; Fauerbach, Paola Nasute; Yeung, Chris; Ungi, Tamas; Rudan, John; Engel, Cecil Jay; Mousavi, Parvin; Fichtinger, Gabor; Jabs, Doris
Real-time automatic tumor segmentation for ultrasound-guided breast-conserving surgery navigation Journal Article
In: International Journal of Computer Assisted Radiology and Surgery (IJCARS), 2022.
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Fooladgar, Fahimeh; To, Minh Nguyen Nhat; Javadi, Golara; Samadi, Samareh; Bayat, Sharareh; Sojoudi, Samira; Eshumani, Walid; Hurtado, Antonio; Chang, Silvia; Black, Peter; Mousavi, Parvin; Abolmaesumi, Purang
Uncertainty-aware Deep Ensemble Model for Targeted Ultrasound-guided Prostate Biopsy Proceedings Article Forthcoming
In: IEEE International Symposium on Biomedical Imaging (ISBI) 2022, Forthcoming.
@inproceedings{Fooladgar2022,
title = {Uncertainty-aware Deep Ensemble Model for Targeted Ultrasound-guided Prostate Biopsy},
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Perera-Ortega, Andrea; Fooladgar, Fahimeh; To, Minh Nguyen Nhat; Jamzad, Amoon; Mousavi, Parvin; Abolmaesumi, Purang
Unsupervised Learning for Classification of Prostate Cancer Severity Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) - BEST PITCH AWARD, 2022.
@conference{Perera-Ortega2022,
title = {Unsupervised Learning for Classification of Prostate Cancer Severity},
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Wu, Catherine O; Diao, Babacar; Groves, Leah; Ungi, Tamas; Sedghi, Alireza; Kikinis, Ron; Mousavi, Parvin; Fichtinger, Gabor
Visualization of the zonal anatomy for transrectal ultrasound guided prostate biopsy Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) - BEST PITCH AWARD, 2022.
@conference{Wu2022,
title = {Visualization of the zonal anatomy for transrectal ultrasound guided prostate biopsy},
author = {Catherine O Wu and Babacar Diao and Leah Groves and Tamas Ungi and Alireza Sedghi and Ron Kikinis and Parvin Mousavi and Gabor Fichtinger},
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Yeung, Chris; Ungi, Tamas; Hu, Zoe; Fichtinger, Gabor
Automated Tumour Reconstruction for Real-Time Visualization in Breast-Conserving Surgical Navigation Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{Yeung2022,
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Barr, Colton; Groves, Leah; Ungi, Tamas; Diao, Babacar; Kikinis, Ron; Mousavi, Parvin; Fichtinger, Gabor
Prostate segmentation and reconstruction for integration in an ultrasound-guided prostate biopsy system for nationwide implementation in Senegal Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
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Lee, Hung-Yu; Hisey, Rebecca; Holden, Matthew; Liu, John; Law, Christine; Ungi, Tamas; Fichtinger, Gabor
Evaluating Faster R-CNN for cataract surgery tool detection using microscopy video Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{Lee2022,
title = {Evaluating Faster R-CNN for cataract surgery tool detection using microscopy video},
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Ehrlich, Joshua; Jamzad, Amoon; Kaufmann, Martin; Rodgers, Jessica; Rudan, John; Ungi, Tamas; Mousavi, Parvin; Fichtinger, Gabor
Determining the location of tumor classifications in breast cancer surgery Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{Ehrlich2022,
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Connolly, Laura; Jamzad, Amoon; Nikniazi, Arash; Poushimin, Rana; Lasso, Andras; Sunderland, Kyle; Ungi, Tamas; Nunzi, Jean Michael; Rudan, John; Fichtinger, Gabor; Mousavi, Parvin
An open-source testbed for developing image-guided robotic tumor-bed inspection Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
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March, Lucas; Rodgers, Jessica; Jamzad, Amoon; Hisey, Rebecca; McKay, Doug; Rudan, John; Kaufmann, Martin; Ren, Kevin YM; Fichtinger, Gabor; Mousavi, Parvin
Semi-supervised cautery detection with preprocessing in basal cell carcinoma surgical videos Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{March2022,
title = {Semi-supervised cautery detection with preprocessing in basal cell carcinoma surgical videos},
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Gilany, Mahdi; Jamzad, Amoon; To, Minh Nguyen Nhat; Wodlinger, Brian; Abolmaesumi, Purang; Mousavi, Parvin
Label Noise Compensation in Prostate Cancer Classification Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{Gilany2022,
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Wilson, Paul; Gilany, Mahdi; Jamzad, Amoon; To, Minh Nguyen Nhat; Wodlinger, Brian; Abolmaesumi, Purang; Mousavi, Parvin
Vision Transformers for Prostate Cancer Detection from Ultrasound Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{Wilson2022,
title = {Vision Transformers for Prostate Cancer Detection from Ultrasound},
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Ehrlich, Joshua; Asselin, Mark; Jamzad, Amoon; Kaufmann, Martin; Rodgers, Jessica; Rudan, John; Ungi, Tamas; Mousavi, Parvin; Fichtinger, Gabor
Cautery state classification for navigated iKnife surgery Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{nokey,
title = {Cautery state classification for navigated iKnife surgery},
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Kitner, Nicole; Rodgers, Jessica; Ungi, Tamas; Korzeniowski, Martin; Olding, Tim; Joshi, Chandra; Mousavi, Parvin; Fichtinger, Gabor
Automated catheter segmentation in 3D ultrasound images from high-dose-rate prostate brachytherapy Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) - BEST PITCH AWARD, 2022.
@conference{Kitner2022,
title = {Automated catheter segmentation in 3D ultrasound images from high-dose-rate prostate brachytherapy},
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Zhou, Meng; Jamzad, Amoon; Izard, Jason; Menard, Alexandre; Siemens, Robert; Mousavi, Parvin
Domain Transfer through Image-to-Image Translation in Prostate Cancer Detection Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{Zhou2022,
title = {Domain Transfer through Image-to-Image Translation in Prostate Cancer Detection},
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Patel, Dhruv; Ziegler, Erik; Lewis, Rob; Mousavi, Parvin; Sedghi, Alireza
Deep Image Clustering for Standardization of Radiological Workflows Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{Patel2022b,
title = {Deep Image Clustering for Standardization of Radiological Workflows},
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Lee, Hung-Yu; Sojoudi, Samira; Gilany, Mahdi; Jamzad, Amoon; Wodlinger, Brian; Abolmaesumi, Purang; Mousavi, Parvin
Visualization of cancer probability maps in micro-ultrasound guided prostate biopsy Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{Lee2022b,
title = {Visualization of cancer probability maps in micro-ultrasound guided prostate biopsy},
author = {Hung-Yu Lee and Samira Sojoudi and Mahdi Gilany and Amoon Jamzad and Brian Wodlinger and Purang Abolmaesumi and Parvin Mousavi},
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Ryan, Sarah GF; Ungi, Tamas; Maxwell, Sarah; Jaeger, Melanie; Patterson, Lindsay; Mousavi, Parvin; Fichtinger, Gabor
Development of a simulation training curriculum for ultrasound-guided vascular access for sustainable translation to West Africa Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{Ryan2022,
title = {Development of a simulation training curriculum for ultrasound-guided vascular access for sustainable translation to West Africa},
author = {Sarah GF Ryan and Tamas Ungi and Sarah Maxwell and Melanie Jaeger and Lindsay Patterson and Parvin Mousavi and Gabor Fichtinger},
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2022
Gilany, Mahdi; Wilson, Paul; Jamzad, Amoon; Fooladgar, Fahimeh; To, Minh Nguyen Nhat; Wodlinger, Brian; Abolmaesumi, Purang; Mousavi, Parvin
Towards Confident Detection of Prostate Cancer using High Resolution Micro-ultrasound Proceedings Article Forthcoming
In: Medical Image Computing and Computer Assisted Interventions (MICCAI 2022), Forthcoming.
@inproceedings{nokey,
title = {Towards Confident Detection of Prostate Cancer using High Resolution Micro-ultrasound},
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Javadi, Golara; Samadi, Samareh; Bayat, Sharareh; and Samira Sojoudi,; Hurtado, Antonio; Eshumani, Walid; Chang, Silvia; Black, Peter; Mousavi, Parvin; Abolmaesumi, Purang
Training Deep Neural Networks with Noisy Clinical Labels: Towards Accurate Detection of Prostate Cancer in US Data Journal Article
In: International Journal of Computer Assisted Radiology and Surgery (IJCARS), 2022.
@article{nokey,
title = {Training Deep Neural Networks with Noisy Clinical Labels: Towards Accurate Detection of Prostate Cancer in US Data},
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Hu, Zoe; Fauerbach, Paola Nasute; Yeung, Chris; Ungi, Tamas; Rudan, John; Engel, Cecil Jay; Mousavi, Parvin; Fichtinger, Gabor; Jabs, Doris
Real-time automatic tumor segmentation for ultrasound-guided breast-conserving surgery navigation Journal Article
In: International Journal of Computer Assisted Radiology and Surgery (IJCARS), 2022.
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title = {Real-time automatic tumor segmentation for ultrasound-guided breast-conserving surgery navigation},
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Fooladgar, Fahimeh; To, Minh Nguyen Nhat; Javadi, Golara; Samadi, Samareh; Bayat, Sharareh; Sojoudi, Samira; Eshumani, Walid; Hurtado, Antonio; Chang, Silvia; Black, Peter; Mousavi, Parvin; Abolmaesumi, Purang
Uncertainty-aware Deep Ensemble Model for Targeted Ultrasound-guided Prostate Biopsy Proceedings Article Forthcoming
In: IEEE International Symposium on Biomedical Imaging (ISBI) 2022, Forthcoming.
@inproceedings{Fooladgar2022,
title = {Uncertainty-aware Deep Ensemble Model for Targeted Ultrasound-guided Prostate Biopsy},
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Connolly, Laura; Jamzad, Amoon; Nikniazi, Arash; Poushimin, Rana; Lasso, Andras; Sunderland, Kyle; Ungi, Tamas; Nunzi, Jean Michael; Rudan, John; Fichtinger, Gabor; Mousavi, Parvin
An open-source testbed for developing image-guided robotic tumor-bed inspection Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{Connolly2022,
title = {An open-source testbed for developing image-guided robotic tumor-bed inspection},
author = {Laura Connolly and Amoon Jamzad and Arash Nikniazi and Rana Poushimin and Andras Lasso and Kyle Sunderland and Tamas Ungi and Jean Michael Nunzi and John Rudan and Gabor Fichtinger and Parvin Mousavi},
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Ehrlich, Joshua; Asselin, Mark; Jamzad, Amoon; Kaufmann, Martin; Rodgers, Jessica; Rudan, John; Ungi, Tamas; Mousavi, Parvin; Fichtinger, Gabor
Cautery state classification for navigated iKnife surgery Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{nokey,
title = {Cautery state classification for navigated iKnife surgery},
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Patel, Dhruv; Ziegler, Erik; Lewis, Rob; Mousavi, Parvin; Sedghi, Alireza
Deep Image Clustering for Standardization of Radiological Workflows Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
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Ehrlich, Joshua; Jamzad, Amoon; Kaufmann, Martin; Rodgers, Jessica; Rudan, John; Ungi, Tamas; Mousavi, Parvin; Fichtinger, Gabor
Determining the location of tumor classifications in breast cancer surgery Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{Ehrlich2022,
title = {Determining the location of tumor classifications in breast cancer surgery},
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Zhou, Meng; Jamzad, Amoon; Izard, Jason; Menard, Alexandre; Siemens, Robert; Mousavi, Parvin
Domain Transfer through Image-to-Image Translation in Prostate Cancer Detection Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{Zhou2022,
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Gilany, Mahdi; Jamzad, Amoon; To, Minh Nguyen Nhat; Wodlinger, Brian; Abolmaesumi, Purang; Mousavi, Parvin
Label Noise Compensation in Prostate Cancer Classification Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{Gilany2022,
title = {Label Noise Compensation in Prostate Cancer Classification},
author = {Mahdi Gilany and Amoon Jamzad and Minh Nguyen Nhat To and Brian Wodlinger and Purang Abolmaesumi and Parvin Mousavi},
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Barr, Colton; Groves, Leah; Ungi, Tamas; Diao, Babacar; Kikinis, Ron; Mousavi, Parvin; Fichtinger, Gabor
Prostate segmentation and reconstruction for integration in an ultrasound-guided prostate biopsy system for nationwide implementation in Senegal Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{Barr2022,
title = {Prostate segmentation and reconstruction for integration in an ultrasound-guided prostate biopsy system for nationwide implementation in Senegal},
author = {Colton Barr and Leah Groves and Tamas Ungi and Babacar Diao and Ron Kikinis and Parvin Mousavi and Gabor Fichtinger},
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March, Lucas; Rodgers, Jessica; Jamzad, Amoon; Hisey, Rebecca; McKay, Doug; Rudan, John; Kaufmann, Martin; Ren, Kevin YM; Fichtinger, Gabor; Mousavi, Parvin
Semi-supervised cautery detection with preprocessing in basal cell carcinoma surgical videos Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{March2022,
title = {Semi-supervised cautery detection with preprocessing in basal cell carcinoma surgical videos},
author = {Lucas March and Jessica Rodgers and Amoon Jamzad and Rebecca Hisey and Doug McKay and John Rudan and Martin Kaufmann and Kevin YM Ren and Gabor Fichtinger and Parvin Mousavi},
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Wilson, Paul; Gilany, Mahdi; Jamzad, Amoon; To, Minh Nguyen Nhat; Wodlinger, Brian; Abolmaesumi, Purang; Mousavi, Parvin
Vision Transformers for Prostate Cancer Detection from Ultrasound Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{Wilson2022,
title = {Vision Transformers for Prostate Cancer Detection from Ultrasound},
author = {Paul Wilson and Mahdi Gilany and Amoon Jamzad and Minh Nguyen Nhat To and Brian Wodlinger and Purang Abolmaesumi and Parvin Mousavi},
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date = {2022-03-22},
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Perera-Ortega, Andrea; Fooladgar, Fahimeh; To, Minh Nguyen Nhat; Jamzad, Amoon; Mousavi, Parvin; Abolmaesumi, Purang
Unsupervised Learning for Classification of Prostate Cancer Severity Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) - BEST PITCH AWARD, 2022.
@conference{Perera-Ortega2022,
title = {Unsupervised Learning for Classification of Prostate Cancer Severity},
author = {Andrea Perera-Ortega and Fahimeh Fooladgar and Minh Nguyen Nhat To and Amoon Jamzad and Parvin Mousavi and Purang Abolmaesumi},
year = {2022},
date = {2022-03-22},
urldate = {2022-03-22},
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Kitner, Nicole; Rodgers, Jessica; Ungi, Tamas; Korzeniowski, Martin; Olding, Tim; Joshi, Chandra; Mousavi, Parvin; Fichtinger, Gabor
Automated catheter segmentation in 3D ultrasound images from high-dose-rate prostate brachytherapy Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) - BEST PITCH AWARD, 2022.
@conference{Kitner2022,
title = {Automated catheter segmentation in 3D ultrasound images from high-dose-rate prostate brachytherapy},
author = {Nicole Kitner and Jessica Rodgers and Tamas Ungi and Martin Korzeniowski and Tim Olding and Chandra Joshi and Parvin Mousavi and Gabor Fichtinger},
year = {2022},
date = {2022-03-22},
urldate = {2022-03-22},
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Wu, Catherine O; Diao, Babacar; Groves, Leah; Ungi, Tamas; Sedghi, Alireza; Kikinis, Ron; Mousavi, Parvin; Fichtinger, Gabor
Visualization of the zonal anatomy for transrectal ultrasound guided prostate biopsy Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) - BEST PITCH AWARD, 2022.
@conference{Wu2022,
title = {Visualization of the zonal anatomy for transrectal ultrasound guided prostate biopsy},
author = {Catherine O Wu and Babacar Diao and Leah Groves and Tamas Ungi and Alireza Sedghi and Ron Kikinis and Parvin Mousavi and Gabor Fichtinger},
year = {2022},
date = {2022-03-22},
urldate = {2022-03-22},
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Yeung, Chris; Ungi, Tamas; Hu, Zoe; Fichtinger, Gabor
Automated Tumour Reconstruction for Real-Time Visualization in Breast-Conserving Surgical Navigation Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{Yeung2022,
title = {Automated Tumour Reconstruction for Real-Time Visualization in Breast-Conserving Surgical Navigation},
author = {Chris Yeung and Tamas Ungi and Zoe Hu and Gabor Fichtinger},
year = {2022},
date = {2022-03-22},
urldate = {2022-03-22},
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Lee, Hung-Yu; Hisey, Rebecca; Holden, Matthew; Liu, John; Law, Christine; Ungi, Tamas; Fichtinger, Gabor
Evaluating Faster R-CNN for cataract surgery tool detection using microscopy video Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{Lee2022,
title = {Evaluating Faster R-CNN for cataract surgery tool detection using microscopy video},
author = {Hung-Yu Lee and Rebecca Hisey and Matthew Holden and John Liu and Christine Law and Tamas Ungi and Gabor Fichtinger},
year = {2022},
date = {2022-03-22},
urldate = {2022-03-22},
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Ryan, Sarah GF; Ungi, Tamas; Maxwell, Sarah; Jaeger, Melanie; Patterson, Lindsay; Mousavi, Parvin; Fichtinger, Gabor
Development of a simulation training curriculum for ultrasound-guided vascular access for sustainable translation to West Africa Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{Ryan2022,
title = {Development of a simulation training curriculum for ultrasound-guided vascular access for sustainable translation to West Africa},
author = {Sarah GF Ryan and Tamas Ungi and Sarah Maxwell and Melanie Jaeger and Lindsay Patterson and Parvin Mousavi and Gabor Fichtinger},
year = {2022},
date = {2022-02-22},
urldate = {2022-02-22},
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Lee, Hung-Yu; Sojoudi, Samira; Gilany, Mahdi; Jamzad, Amoon; Wodlinger, Brian; Abolmaesumi, Purang; Mousavi, Parvin
Visualization of cancer probability maps in micro-ultrasound guided prostate biopsy Conference
20th Annual Symposium of the Imaging Network of Ontario (ImNO) 2022, 2022.
@conference{Lee2022b,
title = {Visualization of cancer probability maps in micro-ultrasound guided prostate biopsy},
author = {Hung-Yu Lee and Samira Sojoudi and Mahdi Gilany and Amoon Jamzad and Brian Wodlinger and Purang Abolmaesumi and Parvin Mousavi},
year = {2022},
date = {2022-02-22},
urldate = {2022-02-22},
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March, Lucas; Rodgers, Jessica; Jamzad, Amoon; Santilli, Alice; Hisey, Rebecca; McKay, Doug; Rudan, John; Kaufmann, Martin; Ren, Kevin Yi Mi; Fichtinger, Gabor; Mousavi, Parvin
Phase Recognition and Cautery Localization in Basal Cell Carcinoma Surgical Videos Proceedings Article
In: SPIE Medical Imaging, International Society for Optics and Photonics International Society for Optics and Photonics, 2022.
@inproceedings{nokey,
title = {Phase Recognition and Cautery Localization in Basal Cell Carcinoma Surgical Videos},
author = {Lucas March and Jessica Rodgers and Amoon Jamzad and Alice Santilli and Rebecca Hisey and Doug McKay and John Rudan and Martin Kaufmann and Kevin Yi Mi Ren and Gabor Fichtinger and Parvin Mousavi},
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Connolly, Laura; Jamzad, Amoon; Nikniazi, Arash; Poushimin, Rana; Nunzi, Jean Michael; Rudan, John F.; Fichtinger, Gabor; Mousavi, Parvin
Feasibility of combined optical and acoustic imaging for surgical cavity scanning Proceedings Article
In: SPIE Medical Imaging, International Society for Optics and Photonics International Society for Optics and Photonics, 2022, 2022.
@inproceedings{Connolly2022b,
title = {Feasibility of combined optical and acoustic imaging for surgical cavity scanning},
author = {Laura Connolly and Amoon Jamzad and Arash Nikniazi and Rana Poushimin and Jean Michael Nunzi and John F. Rudan and Gabor Fichtinger and Parvin Mousavi},
year = {2022},
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Patel, Dhruv; Ziegler, Erik; Lewis, Rob; Mousavi, Parvin; Sedghi, Alireza
Deep image clustering for standardization of radiological workflows Proceedings Article
In: SPIE Medical Imaging, International Society for Optics and Photonics International Society for Optics and Photonics, 2022.
@inproceedings{Patel2022,
title = {Deep image clustering for standardization of radiological workflows},
author = {Dhruv Patel and Erik Ziegler and Rob Lewis and Parvin Mousavi and Alireza Sedghi},
year = {2022},
date = {2022-02-20},
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Kaczmarek, Emily; Jamzad, Amoon; Imtiaz, Tashifa; Nanayakkara, Jina; Renwick, Neil; Mousavi, Parvin
Multi-Omic Graph Transformers for Cancer Classification and Interpretation Conference Forthcoming
Pacific Symposium on Biocomputing (PSB) 2022, Forthcoming.
@conference{Kaczmarek2022,
title = {Multi-Omic Graph Transformers for Cancer Classification and Interpretation},
author = {Emily Kaczmarek and Amoon Jamzad and Tashifa Imtiaz and Jina Nanayakkara and Neil Renwick and Parvin Mousavi},
year = {2022},
date = {2022-01-03},
booktitle = {Pacific Symposium on Biocomputing (PSB) 2022},
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2021
Kaczmarek, Emily; Pyman, Blake; Nanayakkara, Jina; Tuschi, Thomas; Tyryshkin, Kathrin; Renwick, Neil; Mousavi, Parvin
Discriminating Neoplastic from Non-Neoplastic Tissues using a microRNA-based Deep Cancer Classifier Journal Article Forthcoming
In: The American Journal of Pathology, Forthcoming.
@article{Kaczmarek2021,
title = {Discriminating Neoplastic from Non-Neoplastic Tissues using a microRNA-based Deep Cancer Classifier},
author = {Emily Kaczmarek and Blake Pyman and Jina Nanayakkara and Thomas Tuschi and Kathrin Tyryshkin and Neil Renwick and Parvin Mousavi},
year = {2021},
date = {2021-12-20},
journal = {The American Journal of Pathology},
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Aghaeeaval, Mahsa; Bendahan, Nathaniel; Shivji, Zaitoon; Mcinnis, Carter; Jamzad, Amoon; Lomax, Lysa Boisse; Shukla, Garima; Mousavi, Parvin; Winston, Gavin P
Prediction of Patient Survival Following Postanoxic Coma Using EEG Data and Clinical Features Proceedings Article Forthcoming
In: 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), IEEE 2021 Forthcoming.
@inproceedings{Aghaeeaval2021,
title = {Prediction of Patient Survival Following Postanoxic Coma Using EEG Data and Clinical Features},
author = {Mahsa Aghaeeaval and Nathaniel Bendahan and Zaitoon Shivji and Carter Mcinnis and Amoon Jamzad and Lysa Boisse Lomax and Garima Shukla and Parvin Mousavi and Gavin P Winston},
year = {2021},
date = {2021-10-31},
booktitle = {43rd Annual International Conference of the IEEE Engineering in Medicine \& Biology Society (EMBC)},
organization = {IEEE 2021},
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Jamzad, Amoon; Santilli, Alice; Akbarifar, Faranak; Kaufmann, Martin; Logan, Kathryn; Wallis, Julie; Ren, Kevin Yi Mi; Merchant, Shaila; Engel, Jay; Varma, Sonal; Fichtinger, Gabor; Rudan, John F.; Mousavi, Parvin
Graph Transformers for characterization and interpretation of surgical margins Proceedings Article Forthcoming
In: Medical Image Computing and Computer Assisted Interventions (MICCAI), Forthcoming.
@inproceedings{Jamzad2021c,
title = {Graph Transformers for characterization and interpretation of surgical margins},
author = {Amoon Jamzad and Alice Santilli and Faranak Akbarifar and Martin Kaufmann and Kathryn Logan and Julie Wallis and Kevin Yi Mi Ren and Shaila Merchant and Jay Engel and Sonal Varma and Gabor Fichtinger and John F. Rudan and Parvin Mousavi},
year = {2021},
date = {2021-09-27},
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Akbarifar, Faranak; Dukelow, Sean P.; Mousavi, Parvin; Scott, Stephen H.
Computer-aided identification of stroke-associated motor impairments using a virtual reality augmented robotic system Workshop
Joint Workshop on Augmented Environments for Computer-Assisted Interventions (AE-CAI), Computer Assisted and Robotic Endoscopy (CARE), and OR 2.0 Context Aware Operating Theaters (OR2.0) in Medical Image Computing and Computer Assisted Interventions (MICCAI), 2021.
@workshop{Faranak2021,
title = {Computer-aided identification of stroke-associated motor impairments using a virtual reality augmented robotic system},
author = {Faranak Akbarifar and Sean P. Dukelow and Parvin Mousavi and Stephen H. Scott
},
year = {2021},
date = {2021-09-27},
booktitle = {Joint Workshop on Augmented Environments for Computer-Assisted Interventions (AE-CAI), Computer Assisted and Robotic Endoscopy (CARE), and OR 2.0 Context Aware Operating Theaters (OR2.0) in Medical Image Computing and Computer Assisted Interventions (MICCAI)},
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Isen, Jonah; Perera-Ortega, Andrea; Vos, Sjoerd B; Rodionov, Roman; Kanber, Baris; Chowdhury, Fahmida A; Duncan, John S; Mousavi, Parvin; Winston, Gavin P
Non-Parametric Combination of Multimodal MRI for Lesion Detection in Focal Epilepsy Journal Article
In: NeuroImage: Clinical, pp. 102837, 2021.
@article{isen2021non,
title = {Non-Parametric Combination of Multimodal MRI for Lesion Detection in Focal Epilepsy},
author = {Jonah Isen and Andrea Perera-Ortega and Sjoerd B Vos and Roman Rodionov and Baris Kanber and Fahmida A Chowdhury and John S Duncan and Parvin Mousavi and Gavin P Winston},
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Isen, Jonah; Perera-Ortega, Andrea; Vos, Sjoerd B; Rodionov, Roman; Kanber, Baris; Chowdhury, Fahmida Amin; Duncan, John S; Mousavi, Parvin; Winston, Gavin P
Multimodal MRI for Lesion Detection in MRI-Negative Focal Epilepsy Conference Forthcoming
34th International Epilepsy Congress, Forthcoming.
@conference{Isen2021,
title = {Multimodal MRI for Lesion Detection in MRI-Negative Focal Epilepsy},
author = {Jonah Isen and Andrea Perera-Ortega and Sjoerd B Vos and Roman Rodionov and Baris Kanber and Fahmida Amin Chowdhury and John S Duncan and Parvin Mousavi and Gavin P Winston},
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date = {2021-08-28},
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Fichtinger, Gabor; Mousavi, Parvin; Ungi, Tamas; Fenster, Aaron; Abolmaesumi, Purang; Kronreif, Gernot; Ruiz-Alzola, Juan; Ndoye, Alain; Diao, Babacar; Kikinis, Ron
Design of an Ultrasound-Navigated Prostate Cancer Biopsy System for Nationwide Implementation in Senegal Journal Article
In: Journal of Imaging, vol. 7, no. 8, pp. 154, 2021.
@article{fichtinger2021design,
title = {Design of an Ultrasound-Navigated Prostate Cancer Biopsy System for Nationwide Implementation in Senegal},
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date = {2021-08-20},
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Connolly, Laura; Deguet, Anton; Sunderland, Kyle; Lasso, Andras; Ungi, Tamas; Rudan, John F.; Taylor, Russell H.; Mousavi, Parvin; Fichtinger, Gabor
An open-source platform for cooperative, semi-autonomous robotic surgery Conference Forthcoming
IEEE International Conference on Autonomous Systems (ICAS), Forthcoming.
@conference{Connolly2021b,
title = {An open-source platform for cooperative, semi-autonomous robotic surgery},
author = {Laura Connolly and Anton Deguet and Kyle Sunderland and Andras Lasso and Tamas Ungi and John F. Rudan and Russell H. Taylor and Parvin Mousavi and Gabor Fichtinger},
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date = {2021-08-11},
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Thirumal, Sindhura; Jamzad, Amoon; Cotechini, Tiziana; Hindmarch, Charles; Hardy, Celine; Graham, Charles; Berman, David; Siemens, David R; Mousavi, Parvin
Utility of High-Throughput Imaging Mass Cytometry for Cancer Research: A feasibility study Conference
IEEE-EMBC International Conference on Biomedical and Health Informatics (BHI), 2021.
@conference{Thirumal2021b,
title = {Utility of High-Throughput Imaging Mass Cytometry for Cancer Research: A feasibility study},
author = {Sindhura Thirumal and Amoon Jamzad and Tiziana Cotechini and Charles Hindmarch and Celine Hardy and Charles Graham and David Berman and David R Siemens and Parvin Mousavi},
year = {2021},
date = {2021-07-27},
booktitle = {IEEE-EMBC International Conference on Biomedical and Health Informatics (BHI)},
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Javadi, Golara; Bayat, Sharareh; Samadi, Samareh; Sedghi, Alireza; Sojoudi, Samira; Hurtado, Antonio; Chang, Silvia; Black, Peter; Mousavi, Parvin; Abolmaesumi, Purang
Towards Targeted Ultrasound-guided Prostate Biopsy by Incorporating Model and Label Uncertainty in Cancer Detection Journal Article Forthcoming
In: International Journal of Computer Assisted Radiology and Surgery, special issue of International Conference on Information Processing in Computer-Assisted Interventions (IPCAI), Forthcoming.
@article{Javadi2021,
title = {Towards Targeted Ultrasound-guided Prostate Biopsy by Incorporating Model and Label Uncertainty in Cancer Detection},
author = {Golara Javadi and Sharareh Bayat and Samareh Samadi and Alireza Sedghi and Samira Sojoudi and Antonio Hurtado and Silvia Chang and Peter Black and Parvin Mousavi and Purang Abolmaesumi},
year = {2021},
date = {2021-06-22},
journal = {International Journal of Computer Assisted Radiology and Surgery, special issue of International Conference on Information Processing in Computer-Assisted Interventions (IPCAI)},
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Santilli, Alice; Jamzad, Amoon; Sedghi, Alireza; Kaufmann, Martin; Logan, Kathryn; Wallis, Julie; Ren, Kevin YM; Janssen, Natasja; Merchant, Shaila; Engel, Jay; McKay, Doug; Varma, Sonal; Wang, Ami; Fichtinger, Gabor; Rudan, John F.; Mousavi, Parvin
Domain adaptation and self-supervised learning for surgical margin detection Journal Article
In: International Journal of Computer Assisted Radiology and Surgery (IPCAI), vol. 16, no. 5, pp. 861–869, 2021.
@article{santilli2021domain,
title = {Domain adaptation and self-supervised learning for surgical margin detection},
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Grebenisan, Andrew; Sedghi, Alireza; Izard, Jason; Siemens, Robert; Menard, Alexandre; Mousavi, Parvin
Spatial Decomposition For Robust Domain Adaptation In Prostate Cancer Detection Proceedings Article
In: 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), pp. 1218–1222, IEEE 2021.
@inproceedings{grebenisan2021spatial,
title = {Spatial Decomposition For Robust Domain Adaptation In Prostate Cancer Detection},
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Santilli, Alice; Jamzad, Amoon; Sedghi, Alireza; Kaufmann, Martin; Merchant, Shaila; Engel, Jay; Logan, Kathryn; Wallis, Julie; Janssen, Natasja; Varmak, Sonal; Fichtinger, Gabor; Rudan, John F.; Mousavi, Parvin
Self-Supervised Learning For Detection Of Breast Cancer In Surgical Margins With Limited Data Proceedings Article
In: 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), pp. 980–984, IEEE 2021.
@inproceedings{santilli2021self,
title = {Self-Supervised Learning For Detection Of Breast Cancer In Surgical Margins With Limited Data},
author = {Alice Santilli and Amoon Jamzad and Alireza Sedghi and Martin Kaufmann and Shaila Merchant and Jay Engel and Kathryn Logan and Julie Wallis and Natasja Janssen and Sonal Varmak and Gabor Fichtinger and John F. Rudan and Parvin Mousavi },
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Sedghi, Alireza; O’Donnell, Lauren J; Kapur, Tina; Learned-Miller, Erik; Mousavi, Parvin; III, William M Wells
Image registration: Maximum likelihood, minimum entropy and deep learning Journal Article
In: Medical Image Analysis (MEDIA), vol. 69, pp. 101939, 2021.
@article{sedghi2021image,
title = {Image registration: Maximum likelihood, minimum entropy and deep learning},
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date = {2021-04-01},
journal = {Medical Image Analysis (MEDIA)},
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Connolly, Laura; Sunderland, Kyle; Lasso, Andras; Deguet, Anton; Ungi, Tamas; Rudan, John F.; Taylor, Russell H.; Mousavi, Parvin; Fichtinger, Gabor
A platform for robot-assisted intraoperative imaging in breast conserving surgery Conference
The 19th Annual Symposium of the Imaging Network of Ontario (ImNO), no. BEST PITCH AWARD, 2021.
@conference{Connolly2021,
title = {A platform for robot-assisted intraoperative imaging in breast conserving surgery},
author = {Laura Connolly and Kyle Sunderland and Andras Lasso and Anton Deguet and Tamas Ungi and John F. Rudan and Russell H. Taylor and Parvin Mousavi and Gabor Fichtinger},
year = {2021},
date = {2021-03-23},
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Thirumal, Sindhura; Jamzad, Amoon; Cotechini, Tiziana; Hindmarch, Charles; Graham, Charles; Mousavi, Parvin; Siemens, Rob
TITAN: A HyperionTM Imaging System Data Analysis Software Conference
The 19th Annual Symposium of the Imaging Network of Ontario (ImNO), 2021.
@conference{Thirumal2021,
title = {TITAN: A Hyperion^{TM} Imaging System Data Analysis Software},
author = {Sindhura Thirumal and Amoon Jamzad and Tiziana Cotechini and Charles Hindmarch and Charles Graham and Parvin Mousavi and Rob Siemens
},
year = {2021},
date = {2021-03-23},
booktitle = {The 19th Annual Symposium of the Imaging Network of Ontario (ImNO)},
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Jamzad, Amoon; Jamaspishvili, Tamara; Iseman, Rachael; Kaufmann, Martin; Berman, David; Mousavi, Parvin
Platform-Independent Management of Histopathologic Annotations in Cancer Research: Application in High-Dimensional Metabolomic Image Analysis Conference
The 19th Annual Symposium of the Imaging Network of Ontario (ImNO), 2021.
@conference{Jamzad2021,
title = {Platform-Independent Management of Histopathologic Annotations in Cancer Research: Application in High-Dimensional Metabolomic Image Analysis},
author = {Amoon Jamzad and Tamara Jamaspishvili and Rachael Iseman and Martin Kaufmann and David Berman and Parvin Mousavi},
year = {2021},
date = {2021-03-23},
booktitle = {The 19th Annual Symposium of the Imaging Network of Ontario (ImNO)},
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Ehrlich, Joshua; Gerolami, Justin; Wu, Victoria; Hu, Zoe; Fauerbach, Paola Nasute; Jabs, Doris; Engel, Jay; Rudan, John F.; Merchant, Shaila; Walker, Ross; Ungi, Tamas; Mousavi, Parvin; Fichtinger, Gabor
Automated Contouring of Breast Tumors using Machine Learning Conference
The 19th Annual Symposium of the Imaging Network of Ontario (ImNO), 2021.
@conference{Ehrlich2021,
title = {Automated Contouring of Breast Tumors using Machine Learning},
author = {Joshua Ehrlich and Justin Gerolami and Victoria Wu and Zoe Hu and Paola Nasute Fauerbach and Doris Jabs and Jay Engel and John F. Rudan and Shaila Merchant and Ross Walker and Tamas Ungi and Parvin Mousavi and Gabor Fichtinger},
year = {2021},
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Akbarifar, Faranak; Jamzad, Amoon; Santilli, Alice; Kaufmann, Martin; Janssen, Natasja; Connolly, Laura; Ren, Kevin; Vanderbeck, Kaitlin; Wang, Ami; McKay, Doug; Rudan, John F.; Fichtinger, Gabor; Mousavi, Parvin
Tissue Classification of Mass Spectrometry iKnife Data Using Graph Convolutional Networks Conference
The 19th Annual Symposium of the Imaging Network of Ontario (ImNO), 2021.
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Perera-Ortega, Andrea; Sedghi, Alireza; Isen, Jonah; Vos, Sjoerd B; Mousavi, Parvin; Winston, Gavin P
Machine Learning to Detect Brain Lesions in Focal Epilepsy Conference
The 19th Annual Symposium of the Imaging Network of Ontario (ImNO), no. BEST PITCH AWARD, 2021.
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title = {Machine Learning to Detect Brain Lesions in Focal Epilepsy},
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Domain Adaptation and Self-Supervised Learning for Surgical Margin Detection Conference
The 19th Annual Symposium of the Imaging Network of Ontario (ImNO), no. BEST PITCH AWARD, 2021.
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Wiercigroch, Julia; Ungi, Tamas; Idriss, Ahmedou Moulaye; Tfeil, Yahya; Kikinis, Ron; Mousavi, Parvin; Fichtinger, Gabor
Translation of an ultrasound-guided needle placement system to Mauritania Conference
The 19th Annual Symposium of the Imaging Network of Ontario (ImNO), 2021.
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Wu, Catherine O; Diao, Babacar; Ungi, Tamas; Sedghi, Alireza; Kikinis, Ron; Mousavi, Parvin; Fichtinger, Gabor
Development of an open-source prostate biopsy imaging training system Conference
The 19th Annual Symposium of the Imaging Network of Ontario (ImNO), 2021.
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Perera-Ortega, Andrea; Sedghi, Alireza; Isen, Jonah; Vos, Sjoerd B; Mousavi, Parvin; Winston, Gavin P
Machine learning to detect brain lesions in focal epilepsy Proceedings Article
In: Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling, pp. 1159814, International Society for Optics and Photonics SPIE, 2021.
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Ultrasound-guided needle placement system optimized for translation to Mauritania Proceedings Article
In: Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling, pp. 115980X, International Society for Optics and Photonics SPIE, 2021.
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Akbarifar, Faranak; Jamzad, Amoon; Santilli, Alice; Kaufmann, Martin; Janssen, Natasja; Connolly, Laura; Ren, Kevin; Vanderbeck, Kaitlin; Wang, Ami; McKay, Doug; Rudan, John F.; Fichtinger, Gabor; Mousavi, Parvin
Graph-based analysis of mass spectrometry data for tissue characterization with application in basal cell carcinoma surgery Proceedings Article
In: Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling, pp. 1159812, International Society for Optics and Photonics SPIE, 2021.
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